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51.
May JP Ting R Lermer L Thomas JM Roupioz Y Perrin DM 《Journal of the American Chemical Society》2004,126(13):4145-4156
A DNAzyme, synthetically modified with both primary amines and imidazoles, is found to act as a M2+ -independent AP lyase-endonuclease. In the course of the cleavage reaction, this DNAzyme forms a covalent Schiff base intermediate with an abasic site on a complementary oligodeoxyribonucleotide. This intermediate, which is inferred from NaCNBH3 trapping as well as cyanide inhibition, does not evidently accumulate because the second step, dehydrophosphorylative elimination, is fast compared to Schiff base formation. The 5'-product that remains linked to the catalyst hydrolyzes slowly to regenerate free catalyst. The use of duly modified DNAzymes to perform Schiff base catalysis demonstrates the value of modified nucleotides for enhancing the catalytic repertoire of nucleic acids. This work suggests that DNAzymes will be capable of catalyzing aldol condensation reactions. 相似文献
52.
Recent analytical innovations for nucleic acid detection have revolutionized the biological sciences. Single nucleic acid sequence detection methods have been expanded to incorporate multiplexed detection strategies. A variety of nucleic acid detection formats are now available that can address high throughput genomic interrogation. Many of these parallel detection platforms or arrays, employ fluorescence as the signaling method. Fluorescence-based assays offer many advantages, including increased sensitivity, safety and multiplexing capabilities, as well as the ability to measure multiple fluorescence properties. Multiplexed microarray platforms provide parallel detection capabilities capable of measuring thousands of simultaneous responses. This review will discuss both single target detection and microarray applications with a focus on gene expression and pathogenic microorganism (PM) detection. 相似文献
53.
Bianconi PA Joray SJ Aldrich BL Sumranjit J Duffy DJ Long DP Lazorcik JL Raboin L Kearns JK Smulligan SL Babyak JM 《Journal of the American Chemical Society》2004,126(10):3191-3202
The synthesis of poly(hydridocarbyne), one of a class of carbon-based random network polymers and a structural isomer of polyacetlyene, is reported. The network backbone of this polymer is primarily composed of tetrahedrally hybridized carbon atoms, each bearing one hydride substituent and linked via three carbon-carbon single bonds into a three-dimensional random network of fused rings. This atomic-level carbon network backbone confers unusual properties on the polymer, including facile thermal decomposition to form diamond or diamond-like carbon high-quality films at atmospheric pressure, by direct deposition or by chemical vapor deposition (CVD), without the use of hydrogen or any other reagent. 相似文献
54.
Commercially available Ti(NMe(2))(4) has been used effectively as a precatalyst in a facile protocol for the intramolecular hydroamination of aminoalkenes to yield pyrrolidine and piperidine heterocyclic products with isolated yields up to 92%. Geminally substituted substrates display the highest reactivity. This precatalyst is also effective for the hydroamination of activated internal alkenes, providing access to more complex heterocyclic target molecules. 相似文献
55.
Shearer J Jackson HL Schweitzer D Rittenberg DK Leavy TM Kaminsky W Scarrow RC Kovacs JA 《Journal of the American Chemical Society》2002,124(38):11417-11428
Nitrile hydratase (NHase) is an iron-containing metalloenzyme that converts nitriles to amides. The mechanism by which this biochemical reaction occurs is unknown. One mechanism that has been proposed involves nucleophilic attack of an Fe-bound nitrile by water (or hydroxide). Reported herein is a five-coordinate model compound ([Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+)) containing Fe(III) in an environment resembling that of NHase, which reversibly binds a variety of nitriles, alcohols, amines, and thiocyanate. XAS shows that five-coordinate [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) reacts with both methanol and acetonitrile to afford a six-coordinate solvent-bound complex. Competitive binding studies demonstrate that MeCN preferentially binds over ROH, suggesting that nitriles would be capable of displacing the H(2)O coordinated to the iron site of NHase. Thermodynamic parameters were determined for acetonitrile (DeltaH = -6.2(+/-0.2) kcal/mol, DeltaS = -29.4(+/-0.8) eu), benzonitrile (-4.2(+/-0.6) kcal/mol, DeltaS = -18(+/-3) eu), and pyridine (DeltaH = -8(+/-1) kcal/mol, DeltaS = -41(+/-6) eu) binding to [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) using variable-temperature electronic absorption spectroscopy. Ligand exchange kinetics were examined for acetonitrile, iso-propylnitrile, benzonitrile, and 4-tert-butylpyridine using (13)C NMR line-broadening analysis, at a variety of temperatures. Activation parameters for ligand exchange were determined to be DeltaH(+ +) = 7.1(+/-0.8) kcal/mol, DeltaS(+ +) = -10(+/-1) eu (acetonitrile), DeltaH(+ +) = 5.4(+/-0.6) kcal/mol, DeltaS(+ +) = -17(+/-2) eu (iso-propionitrile), DeltaH(+ +) = 4.9(+/-0.8) kcal/mol, DeltaS(+ +) = -20(+/-3) eu (benzonitrile), and DeltaH(+ +) = 4.7(+/-1.4) kcal/mol DeltaS(+ +) = -18(+/-2) eu (4-tert-butylpyridine). The thermodynamic parameters for pyridine binding to a related complex, [Fe(III)(S(2)(Me2)N(3)(Pr,Pr))](+) (DeltaH = -5.9(+/-0.8) kcal/mol, DeltaS = -24(+/-3) eu), are also reported, as well as kinetic parameters for 4-tert-butylpyridine exchange (DeltaH(+ +) = 3.1(+/-0.8) kcal/mol, DeltaS(+ +) = -25(+/-3) eu). These data show for the first time that, when it is contained in a ligand environment similar to that of NHase, Fe(III) is capable of forming a stable complex with nitriles. Also, the rates of ligand exchange demonstrate that low-spin Fe(III) in this ligand environment is more labile than expected. Furthermore, comparison of [Fe(III)(S(2)(Me2)N(3)(Et,Pr))](+) and [Fe(III)(S(2)(Me2)N(3)(Pr,Pr))](+) demonstrates how minor distortions induced by ligand constraints can dramatically alter the reactivity of a metal complex. 相似文献
56.
Jason C. White Zakia D. Parrish Martin P.N. Gent Brian D. Eitzer 《Microchemical Journal》2005,81(1):148-155
Ten plant species previously shown to accumulate inorganic elements effectively from natural solids were grown under field conditions in p,p′-dichlorodiphenyldichloroethane (p,p′-DDE) contaminated soil. The plant species, which included rye, mustard, canola, vetch, pigeonpea, clover, peanut, and 3 cultivars of white lupin, represented both monocots and dicots, as well as two major families within the dicots: the Brassicaceae and the Fabaceae. The plants varied widely in their ability to phytoextract and translocate weathered p,p′-DDE. The percentage of contaminant phytoextracted ranged from 0.06% (white lupin) to 0.22% (clover, vetch), and the translocation factors (TF; contaminant concentration ratio of stems to roots) ranged from 0.04 (clover, white lupin) to 0.37 (canola). An inverse relationship exists between the amount of contaminant in the roots as measured by the root BCF (bioconcentration factor; dry weight contaminant concentration ratio of root to soil) and the TF. Duplicate mounds of each species were periodically amended with nitrogen (N), phosphorus (P), nitrogen and phosphorus together (N/P); a minus phosphorus treatment involved the addition of AlSO4 to the soil prior to planting. The effect of nutrient regime on plant biomass, p,p′-DDE uptake and translocation, and inorganic element content varied greatly among the 10 plant species. For some species (rye, vetch, pigeonpea, clover, white lupin), reductions or non-significant changes in p,p′-DDE uptake were observed under the nutrient treatments and were not correlated with plant biomass effects. For mustard, canola, and peanut, the percentage of p,p′-DDE phytoextracted in the various treatments was more than doubled and was directly correlated with a two-fold increase in total plant biomass. Although it is generally assumed that fertilizer amendments will enhance the phytoremediation of organic and inorganic pollutants, the data here suggest that such effects are highly species specific and in some cases may actually decrease remediation potential. 相似文献
57.
Artuso M Gao M Goldberg M He D Horwitz N Moneti GC Mountain R Muheim F Mukhin Y Playfer S Rozen Y Stone S Xing X Zhu G Bartelt J Csorna SE Egyed Z Jain V Gibaut D Kinoshita K Pomianowski P Barish B Chadha M Chan S Cowen DF Eigen G Miller JS O'Grady C Urheim J Weinstein AJ Würthwein F Asner DM Athanas M Bliss DW Brower WS Masek G Paar HP Gronberg J Korte CM Kutschke R Menary S Morrison RJ Nakanishi S Nelson HN Nelson TK Qiao C Richman JD Roberts D Ryd A Tajima H Witherell MS Balest R Cho K 《Physical review letters》1995,75(5):785-789
58.
Barish B Chadha M Chan S Cowen DF Eigen G Miller JS O'Grady C Urheim J Weinstein AJ Acosta D Athanas M Masek G Paar HP Gronberg J Kutschke R Menary S Morrison RJ Nakanishi S Nelson HN Nelson TK Qiao C Richman JD Ryd A Tajima H Sperka D Witherell MS Procario M Balest R Cho K Daoudi M Ford WT Johnson DR Lingel K Lohner M Rankin P Smith JG Alexander JP Bebek C Berkelman K Bloom K Browder TE Cassel DG Cho HA Coffman DM Crowcroft DS Drell PS Ehrlich R Gaidarev P Galik RS Garcia-Sciveres M Geiser B 《Physical review D: Particles and fields》1995,51(3):1014-1033
59.
Bartelt J Csorna SE Egyed Z Jain V Gibaut D Kinoshita K Pomianowski P Barish B Chadha M Chan S Cowen DF Eigen G Miller JS O'Grady C Urheim J Weinstein AJ Würthwein F Asner DM Athanas M Bliss DW Brower WS Masek G Paar HP Gronberg J Korte CM Kutschke R Menary S Morrison RJ Nakanishi S Nelson HN Nelson TK Qiao C Richman JD Roberts D Ryd A Tajima H Witherell MS Balest R Cho K Ford WT Lohner M Park H Rankin P Smith JG Alexander JP Bebek C Berger BE Berkelman K Bloom K Browder TE Cassel DG Cho HA 《Physical review D: Particles and fields》1995,52(9):4860-4867
60.
Two partial ordersP andQ on a setX arecomplementary (written asPQ) if they share no ordered pairs (except for loops) but the transitive closure of the union is all possible ordered pairs. For each positive integern we form a graph Pos
n
consisting of all nonempty partial orders on {1, ,n} with edges denoting complementation. We investigate here properties of the graphs Pos
n
. In particular, we show:
| The diameter of Pos n is 5 for alln>2 (and hence Pos n is connected for alln); | |
| With probability 1, the distance between two members of Pos n is 2; | |
| The graphs Pos n are universal (i.e. every graph occurs as an induced subgraph of some Pos n ); | |
|
The maximal size (n) of an independent set of Pos
n
satisfies the asymptotic formula
|
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